Analysis Result
For each 16 analysis done on the platform, you can download the results from the Jobs View by clicking on the download icon. By the download result is a ZIP file like the one below.
Analysis result files
mapping.tab
This table file contains metadata information about each dataset in feature tables (e.g: SOTUs, ZOTUs, Metabolites, … tables). This is the serialized version of the metadata for each dataset uploaded to the platform. The columns are ordered as follows:
dataset-specific columns: metadata at dataset Level (e.g: dataset name, dataset type, sequencing method)
project-specific columns: metadata at project Level (e.g: project name, project description)
organism-specific columns: metadata at organism Level (e.g: organism name, organism species, genetic modification)
sample-specific columns: metadata at sample Level (e.g: sample name, sample type, sample collection date)
Note
The column dataset_name_in_feature_table contains the names of the datasets in the corresponding feature tables. This column is used to map the metadata to the corresponding dataset in the feature tables.
Various dataset types of a sample can then be distinguished by sorting rows by dataset_type for a specific sample_msd_id.
SOTUs-Table.tab
This table has its rows as SOTUs (Species-level OTUs) and columns as datasets names with format of D<DatasetID>_<given dataset name> (see `Datasets ID prefix Table`_). Final column of this table is Taxonomy which includes the taxonomy assigned to the SOTU by Sina and SILVA database version 138.1.
Note
In order to map corresponding metadata to datasets in this table, use dataset_name_in_feature_table column in the mapping.tab file.
SOTUs-Tree-nj.tre
This is a phylogenetic tree of SOTUs in Newick format.
SOTUs-Seqs.fasta
This file contains the sequences of SOTUs in FASTA format.
ZOTUs-Table.tab
This table has its rows as ZOTUs and columns as datasets names with format of D<DatasetID>_<Dataset name>.
ZOTUs-Seqs.fasta
This file contains the sequences of ZOTUs in FASTA format.
ZOTUs-Tree-nj.tre
This is a phylogenetic tree of ZOTUs in Newick format.
krona_plot.html
This is a Krona plot of the SOTUs.It shows the taxonomic distribution of the SOTUs in a hierarchical way.
Map-GOTU-FOTU.tab
This two-column table file contains the mapping information to assign GOTUs to their corresponding FOTUs.
Map-SOTU-GOTU.tab
This two-colum table file contains the mapping information to assign SOTUs to their corresponding GOTUs.
Map-ZOTU-SOTU.tab
This two-colum table file contains the mapping information to assign ZOTUs to their corresponding SOTUs.
Metabolites-Table.tab
This table has its rows as metabolites and columns as datasets names with format of DTM<DatasetID>_<given dataset name> (see Datasets ID prefix). Each metabolite measurement is unique by combining Metabolites_Name, Normalization_Method, and Unit. The rest of columns are dataset names with format of DTM<DatasetID>_<given dataset name>. The values in the table are the measurements of the metabolites in the corresponding dataset.
Note
In order to map corresponding metadata to datasets in this table, to use dataset_name_in_feature_table column in the mapping.tab file.