MSD (Microbial Signature Database)

Microbial Signatures Database (MSD) aims to assist biological consortia and laboratories with handling, storing, analyzing and sharing their data of interest. We aim to provide a solution that safely stores sensitive and non-sensitive data, enables their search by using custom filters, runs analyses that each user can tune to suit their needs and finally gives the opportunity for each member of the platform to share the raw data and the results with all other members of the platform. By using cutting-edge technologies, this platform guarantees the safety and resilience of the deposited data, while simultaneously creating an intuitive and all-inclusive enviroment. This platform is currently being financed by the grant: CRC 1371.

Having access to MSD will enable the researchers benefit from standardized metadata storage, integrated collection of data (16S, 18S, ITS, Metagenomics, Proteomics, Metabolomics, Transcriptomics), and project management using only one platform.

Note

This project is under active development so that it changes frequently.

Explore The Documentation

• MSD Database Structure
• Quick Start
  • Registration of datasets to MSD
  • Creating Account
  • Defining Project
  • Defining Protocols
  • Defining Organisms
    • I. Create Template
    • II. Fill in the Template
    • III. Uploading Template
  • Defining Samples
    • I. Create Template
    • II. Fill in the Template
    • III. Uploading Template
  • 16S Dataset Registration
    • I. Create Template
    • II. Fill in the Template
    • III. Preparation of fastq files.
    • IV. Uploading Template
  • Metabolomics Dataset Registration
    • Defining a Metabolomic Run
    • Registration of Metabolites (Targeted Metabolomics)
• Overview
  • Datasets View
  • Samples view
  • Organisms View
  • Projects View
  • Origin View
  • Protocols View